#
#  Copyright 2025 The InfiniFlow Authors. All Rights Reserved.
#
#  Licensed under the Apache License, Version 2.0 (the "License");
#  you may not use this file except in compliance with the License.
#  You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
#  Unless required by applicable law or agreed to in writing, software
#  distributed under the License is distributed on an "AS IS" BASIS,
#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#  See the License for the specific language governing permissions and
#  limitations under the License.
#

import logging
import re
import os
from functools import reduce
from io import BytesIO
from timeit import default_timer as timer
from docx import Document
from docx.image.exceptions import InvalidImageStreamError, UnexpectedEndOfFileError, UnrecognizedImageError
from docx.opc.pkgreader import _SerializedRelationships, _SerializedRelationship
from docx.opc.oxml import parse_xml
from markdown import markdown
from PIL import Image

from common.constants import LLMType
from api.db.services.llm_service import LLMBundle
from rag.utils.file_utils import extract_embed_file, extract_links_from_pdf, extract_links_from_docx, extract_html
from deepdoc.parser import DocxParser, ExcelParser, HtmlParser, JsonParser, MarkdownElementExtractor, MarkdownParser, PdfParser, TxtParser
from deepdoc.parser.figure_parser import VisionFigureParser,vision_figure_parser_docx_wrapper,vision_figure_parser_pdf_wrapper
from deepdoc.parser.pdf_parser import PlainParser, VisionParser
from deepdoc.parser.mineru_parser import MinerUParser
from deepdoc.parser.docling_parser import DoclingParser
from deepdoc.parser.tcadp_parser import TCADPParser
from rag.nlp import concat_img, find_codec, naive_merge, naive_merge_with_images, naive_merge_docx, rag_tokenizer, tokenize_chunks, tokenize_chunks_with_images, tokenize_table

def by_deepdoc(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, pdf_cls = None ,**kwargs):
    callback = callback
    binary = binary
    pdf_parser = pdf_cls() if pdf_cls else Pdf()
    sections, tables = pdf_parser(
        filename if not binary else binary,
        from_page=from_page,
        to_page=to_page,
        callback=callback
    )

    tables = vision_figure_parser_pdf_wrapper(tbls=tables,
                                              callback=callback,
                                              **kwargs)
    return sections, tables, pdf_parser


def by_mineru(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, pdf_cls = None ,**kwargs):
    mineru_executable = os.environ.get("MINERU_EXECUTABLE", "mineru")
    mineru_api = os.environ.get("MINERU_APISERVER", "http://host.docker.internal:9987")
    pdf_parser = MinerUParser(mineru_path=mineru_executable, mineru_api=mineru_api)

    if not pdf_parser.check_installation():
        callback(-1, "MinerU not found.")
        return None, None, pdf_parser

    sections, tables = pdf_parser.parse_pdf(
        filepath=filename,
        binary=binary,
        callback=callback,
        output_dir=os.environ.get("MINERU_OUTPUT_DIR", ""),
        backend=os.environ.get("MINERU_BACKEND", "pipeline"),
        delete_output=bool(int(os.environ.get("MINERU_DELETE_OUTPUT", 1))),
    )
    return sections, tables, pdf_parser


def by_docling(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, pdf_cls = None ,**kwargs):
    pdf_parser = DoclingParser()

    if not pdf_parser.check_installation():
        callback(-1, "Docling not found.")
        return None, None, pdf_parser

    sections, tables = pdf_parser.parse_pdf(
        filepath=filename,
        binary=binary,
        callback=callback,
        output_dir=os.environ.get("MINERU_OUTPUT_DIR", ""),
        delete_output=bool(int(os.environ.get("MINERU_DELETE_OUTPUT", 1))),
    )
    return sections, tables, pdf_parser


def by_tcadp(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, pdf_cls = None ,**kwargs):
    tcadp_parser = TCADPParser()

    if not tcadp_parser.check_installation():
        callback(-1, "TCADP parser not available. Please check Tencent Cloud API configuration.")
        return None, None, tcadp_parser

    sections, tables = tcadp_parser.parse_pdf(
        filepath=filename,
        binary=binary,
        callback=callback,
        output_dir=os.environ.get("TCADP_OUTPUT_DIR", ""),
        file_type="PDF"
    )
    return sections, tables, tcadp_parser


def by_plaintext(filename, binary=None, from_page=0, to_page=100000, callback=None, **kwargs):
    if kwargs.get("layout_recognizer", "") == "Plain Text":
        pdf_parser = PlainParser()
    else:
        vision_model = LLMBundle(kwargs["tenant_id"], LLMType.IMAGE2TEXT, llm_name=kwargs.get("layout_recognizer", ""), lang=kwargs.get("lang", "Chinese"))
        pdf_parser = VisionParser(vision_model=vision_model, **kwargs)
    
    sections, tables = pdf_parser(
        filename if not binary else binary,
        from_page=from_page,
        to_page=to_page,
        callback=callback
    )
    return sections, tables, pdf_parser


PARSERS = {
    "deepdoc":  by_deepdoc,
    "mineru":   by_mineru,
    "docling":  by_docling,
    "tcadp":    by_tcadp,
    "plaintext": by_plaintext,  # default
}


class Docx(DocxParser):
    def __init__(self):
        pass

    def get_picture(self, document, paragraph):
        imgs = paragraph._element.xpath('.//pic:pic')
        if not imgs:
            return None
        res_img = None
        for img in imgs:
            embed = img.xpath('.//a:blip/@r:embed')
            if not embed:
                continue
            embed = embed[0]
            try:
                related_part = document.part.related_parts[embed]
                image_blob = related_part.image.blob
            except UnrecognizedImageError:
                logging.info("Unrecognized image format. Skipping image.")
                continue
            except UnexpectedEndOfFileError:
                logging.info("EOF was unexpectedly encountered while reading an image stream. Skipping image.")
                continue
            except InvalidImageStreamError:
                logging.info("The recognized image stream appears to be corrupted. Skipping image.")
                continue
            except UnicodeDecodeError:
                logging.info("The recognized image stream appears to be corrupted. Skipping image.")
                continue
            except Exception:
                logging.info("The recognized image stream appears to be corrupted. Skipping image.")
                continue
            try:
                image = Image.open(BytesIO(image_blob)).convert('RGB')
                if res_img is None:
                    res_img = image
                else:
                    res_img = concat_img(res_img, image)
            except Exception:
                continue

        return res_img

    def __clean(self, line):
        line = re.sub(r"\u3000", " ", line).strip()
        return line

    def __get_nearest_title(self, table_index, filename):
        """Get the hierarchical title structure before the table"""
        import re
        from docx.text.paragraph import Paragraph

        titles = []
        blocks = []

        # Get document name from filename parameter
        doc_name = re.sub(r"\.[a-zA-Z]+$", "", filename)
        if not doc_name:
            doc_name = "Untitled Document"

        # Collect all document blocks while maintaining document order
        try:
            # Iterate through all paragraphs and tables in document order
            for i, block in enumerate(self.doc._element.body):
                if block.tag.endswith('p'):  # Paragraph
                    p = Paragraph(block, self.doc)
                    blocks.append(('p', i, p))
                elif block.tag.endswith('tbl'):  # Table
                    blocks.append(('t', i, None))  # Table object will be retrieved later
        except Exception as e:
            logging.error(f"Error collecting blocks: {e}")
            return ""

        # Find the target table position
        target_table_pos = -1
        table_count = 0
        for i, (block_type, pos, _) in enumerate(blocks):
            if block_type == 't':
                if table_count == table_index:
                    target_table_pos = pos
                    break
                table_count += 1

        if target_table_pos == -1:
            return ""  # Target table not found

        # Find the nearest heading paragraph in reverse order
        nearest_title = None
        for i in range(len(blocks)-1, -1, -1):
            block_type, pos, block = blocks[i]
            if pos >= target_table_pos:  # Skip blocks after the table
                continue

            if block_type != 'p':
                continue

            if block.style and block.style.name and re.search(r"Heading\s*(\d+)", block.style.name, re.I):
                try:
                    level_match = re.search(r"(\d+)", block.style.name)
                    if level_match:
                        level = int(level_match.group(1))
                        if level <= 7:  # Support up to 7 heading levels
                            title_text = block.text.strip()
                            if title_text:  # Avoid empty titles
                                nearest_title = (level, title_text)
                                break
                except Exception as e:
                    logging.error(f"Error parsing heading level: {e}")

        if nearest_title:
            # Add current title
            titles.append(nearest_title)
            current_level = nearest_title[0]

            # Find all parent headings, allowing cross-level search
            while current_level > 1:
                found = False
                for i in range(len(blocks)-1, -1, -1):
                    block_type, pos, block = blocks[i]
                    if pos >= target_table_pos:  # Skip blocks after the table
                        continue

                    if block_type != 'p':
                        continue

                    if block.style and re.search(r"Heading\s*(\d+)", block.style.name, re.I):
                        try:
                            level_match = re.search(r"(\d+)", block.style.name)
                            if level_match:
                                level = int(level_match.group(1))
                                # Find any heading with a higher level
                                if level < current_level:
                                    title_text = block.text.strip()
                                    if title_text:  # Avoid empty titles
                                        titles.append((level, title_text))
                                        current_level = level
                                        found = True
                                        break
                        except Exception as e:
                            logging.error(f"Error parsing parent heading: {e}")

                if not found:  # Break if no parent heading is found
                    break

            # Sort by level (ascending, from highest to lowest)
            titles.sort(key=lambda x: x[0])
            # Organize titles (from highest to lowest)
            hierarchy = [doc_name] + [t[1] for t in titles]
            return " > ".join(hierarchy)

        return ""

    def __call__(self, filename, binary=None, from_page=0, to_page=100000):
        self.doc = Document(
            filename) if not binary else Document(BytesIO(binary))
        pn = 0
        lines = []
        last_image = None
        for p in self.doc.paragraphs:
            if pn > to_page:
                break
            if from_page <= pn < to_page:
                if p.text.strip():
                    if p.style and p.style.name == 'Caption':
                        former_image = None
                        if lines and lines[-1][1] and lines[-1][2] != 'Caption':
                            former_image = lines[-1][1].pop()
                        elif last_image:
                            former_image = last_image
                            last_image = None
                        lines.append((self.__clean(p.text), [former_image], p.style.name))
                    else:
                        current_image = self.get_picture(self.doc, p)
                        image_list = [current_image]
                        if last_image:
                            image_list.insert(0, last_image)
                            last_image = None
                        lines.append((self.__clean(p.text), image_list, p.style.name if p.style else ""))
                else:
                    if current_image := self.get_picture(self.doc, p):
                        if lines:
                            lines[-1][1].append(current_image)
                        else:
                            last_image = current_image
            for run in p.runs:
                if 'lastRenderedPageBreak' in run._element.xml:
                    pn += 1
                    continue
                if 'w:br' in run._element.xml and 'type="page"' in run._element.xml:
                    pn += 1
        new_line = [(line[0], reduce(concat_img, line[1]) if line[1] else None) for line in lines]

        tbls = []
        for i, tb in enumerate(self.doc.tables):
            title = self.__get_nearest_title(i, filename)
            html = "<table>"
            if title:
                html += f"<caption>Table Location: {title}</caption>"
            for r in tb.rows:
                html += "<tr>"
                i = 0
                try:
                    while i < len(r.cells):
                        span = 1
                        c = r.cells[i]
                        for j in range(i + 1, len(r.cells)):
                            if c.text == r.cells[j].text:
                                span += 1
                                i = j
                            else:
                                break
                        i += 1
                        html += f"<td>{c.text}</td>" if span == 1 else f"<td colspan='{span}'>{c.text}</td>"
                except Exception as e:
                    logging.warning(f"Error parsing table, ignore: {e}")
                html += "</tr>"
            html += "</table>"
            tbls.append(((None, html), ""))
        return new_line, tbls

    def to_markdown(self, filename=None, binary=None, inline_images: bool = True):
        """
        This function uses mammoth, licensed under the BSD 2-Clause License.
        """

        import base64
        import uuid

        import mammoth
        from markdownify import markdownify

        docx_file = BytesIO(binary) if binary else open(filename, "rb")

        def _convert_image_to_base64(image):
            try:
                with image.open() as image_file:
                    image_bytes = image_file.read()
                encoded = base64.b64encode(image_bytes).decode("utf-8")
                base64_url = f"data:{image.content_type};base64,{encoded}"

                alt_name = "image"
                alt_name = f"img_{uuid.uuid4().hex[:8]}"

                return {"src": base64_url, "alt": alt_name}
            except Exception as e:
                logging.warning(f"Failed to convert image to base64: {e}")
                return {"src": "", "alt": "image"}

        try:
            if inline_images:
                result = mammoth.convert_to_html(docx_file, convert_image=mammoth.images.img_element(_convert_image_to_base64))
            else:
                result = mammoth.convert_to_html(docx_file)

            html = result.value

            markdown_text = markdownify(html)
            return markdown_text

        finally:
            if not binary:
                docx_file.close()


class Pdf(PdfParser):
    def __init__(self):
        super().__init__()

    def __call__(self, filename, binary=None, from_page=0,
                 to_page=100000, zoomin=3, callback=None, separate_tables_figures=False):
        start = timer()
        first_start = start
        callback(msg="OCR started")
        self.__images__(
            filename if not binary else binary,
            zoomin,
            from_page,
            to_page,
            callback
        )
        callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
        logging.info("OCR({}~{}): {:.2f}s".format(from_page, to_page, timer() - start))

        start = timer()
        self._layouts_rec(zoomin)
        callback(0.63, "Layout analysis ({:.2f}s)".format(timer() - start))

        start = timer()
        self._table_transformer_job(zoomin)
        callback(0.65, "Table analysis ({:.2f}s)".format(timer() - start))

        start = timer()
        self._text_merge(zoomin=zoomin)
        callback(0.67, "Text merged ({:.2f}s)".format(timer() - start))

        if separate_tables_figures:
            tbls, figures = self._extract_table_figure(True, zoomin, True, True, True)
            self._concat_downward()
            logging.info("layouts cost: {}s".format(timer() - first_start))
            return [(b["text"], self._line_tag(b, zoomin)) for b in self.boxes], tbls, figures
        else:
            tbls = self._extract_table_figure(True, zoomin, True, True)
            self._naive_vertical_merge()
            self._concat_downward()
            self._final_reading_order_merge()
            # self._filter_forpages()
            logging.info("layouts cost: {}s".format(timer() - first_start))
            return [(b["text"], self._line_tag(b, zoomin)) for b in self.boxes], tbls


class Markdown(MarkdownParser):
    def md_to_html(self, sections):
        if not sections:
            return []
        if isinstance(sections, type("")):
            text = sections
        elif isinstance(sections[0], type("")):
            text = sections[0]
        else:
            return []

        from bs4 import BeautifulSoup
        html_content = markdown(text)
        soup = BeautifulSoup(html_content, 'html.parser')
        return soup
    
    def get_picture_urls(self, soup):
        if soup:
            return [img.get('src') for img in soup.find_all('img') if img.get('src')]
        return []

    def get_hyperlink_urls(self, soup):
        if soup:
            return set([a.get('href') for a in soup.find_all('a') if a.get('href')])
        return []
    
    def get_pictures(self, text):
        """Download and open all images from markdown text."""
        import requests
        soup = self.md_to_html(text)
        image_urls = self.get_picture_urls(soup)
        images = []
        # Find all image URLs in text
        for url in image_urls:
            if not url:
                continue
            try:
                # check if the url is a local file or a remote URL
                if url.startswith(('http://', 'https://')):
                    # For remote URLs, download the image
                    response = requests.get(url, stream=True, timeout=30)
                    if response.status_code == 200 and response.headers['Content-Type'] and response.headers['Content-Type'].startswith('image/'):
                        img = Image.open(BytesIO(response.content)).convert('RGB')
                        images.append(img)
                else:
                    # For local file paths, open the image directly
                    from pathlib import Path
                    local_path = Path(url)
                    if not local_path.exists():
                        logging.warning(f"Local image file not found: {url}")
                        continue
                    img = Image.open(url).convert('RGB')
                    images.append(img)
            except Exception as e:
                logging.error(f"Failed to download/open image from {url}: {e}")
                continue

        return images if images else None

    def __call__(self, filename, binary=None, separate_tables=True,delimiter=None):
        if binary:
            encoding = find_codec(binary)
            txt = binary.decode(encoding, errors="ignore")
        else:
            with open(filename, "r") as f:
                txt = f.read()

        remainder, tables = self.extract_tables_and_remainder(f'{txt}\n', separate_tables=separate_tables)
        # To eliminate duplicate tables in chunking result, uncomment code below and set separate_tables to True in line 410.
        # extractor = MarkdownElementExtractor(remainder)
        extractor = MarkdownElementExtractor(txt)
        element_sections = extractor.extract_elements(delimiter)
        sections = [(element, "") for element in element_sections]
        tbls = []
        for table in tables:
            tbls.append(((None, markdown(table, extensions=['markdown.extensions.tables'])), ""))
        return sections, tbls

def load_from_xml_v2(baseURI, rels_item_xml):
    """
    Return |_SerializedRelationships| instance loaded with the
    relationships contained in *rels_item_xml*. Returns an empty
    collection if *rels_item_xml* is |None|.
    """
    srels = _SerializedRelationships()
    if rels_item_xml is not None:
        rels_elm = parse_xml(rels_item_xml)
        for rel_elm in rels_elm.Relationship_lst:
            if rel_elm.target_ref in ('../NULL', 'NULL'):
                continue
            srels._srels.append(_SerializedRelationship(baseURI, rel_elm))
    return srels

def chunk(filename, binary=None, from_page=0, to_page=100000,
          lang="Chinese", callback=None, **kwargs):
    """
        Supported file formats are docx, pdf, excel, txt.
        This method apply the naive ways to chunk files.
        Successive text will be sliced into pieces using 'delimiter'.
        Next, these successive pieces are merge into chunks whose token number is no more than 'Max token number'.
    """
    urls = set()
    url_res = []


    is_english = lang.lower() == "english"  # is_english(cks)
    parser_config = kwargs.get(
        "parser_config", {
            "chunk_token_num": 512, "delimiter": "\n!?。；！？", "layout_recognize": "DeepDOC", "analyze_hyperlink": True})
    doc = {
        "docnm_kwd": filename,
        "title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
    }
    doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
    res = []
    pdf_parser = None
    section_images = None

    is_root = kwargs.get("is_root", True)
    embed_res = []
    if is_root:
        # Only extract embedded files at the root call
        embeds = []
        if binary is not None:
            embeds = extract_embed_file(binary)
        else:
            raise Exception("Embedding extraction from file path is not supported.")

        # Recursively chunk each embedded file and collect results
        for embed_filename, embed_bytes in embeds:
            try:
                sub_res = chunk(embed_filename, binary=embed_bytes, lang=lang, callback=callback, is_root=False, **kwargs) or []
                embed_res.extend(sub_res)
            except Exception as e:
                if callback:
                    callback(0.05, f"Failed to chunk embed {embed_filename}: {e}")
                continue

    if re.search(r"\.docx$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")
        if parser_config.get("analyze_hyperlink", False) and is_root:
            urls = extract_links_from_docx(binary)
            for index, url in enumerate(urls):
                html_bytes, metadata = extract_html(url)
                if not html_bytes:
                    continue
                try:
                    sub_url_res = chunk(url, html_bytes, callback=callback, lang=lang, is_root=False, **kwargs)
                except Exception as e:
                    logging.info(f"Failed to chunk url in registered file type {url}: {e}")
                    sub_url_res = chunk(f"{index}.html", html_bytes, callback=callback, lang=lang, is_root=False, **kwargs)
                url_res.extend(sub_url_res)

        # fix "There is no item named 'word/NULL' in the archive", referring to https://github.com/python-openxml/python-docx/issues/1105#issuecomment-1298075246
        _SerializedRelationships.load_from_xml = load_from_xml_v2
        sections, tables = Docx()(filename, binary)

        tables=vision_figure_parser_docx_wrapper(sections=sections,tbls=tables,callback=callback,**kwargs)

        res = tokenize_table(tables, doc, is_english)
        callback(0.8, "Finish parsing.")

        st = timer()

        chunks, images = naive_merge_docx(
            sections, int(parser_config.get(
                "chunk_token_num", 128)), parser_config.get(
                "delimiter", "\n!?。；！？"))

        if kwargs.get("section_only", False):
            chunks.extend(embed_res)
            chunks.extend(url_res)
            return chunks

        res.extend(tokenize_chunks_with_images(chunks, doc, is_english, images))
        logging.info("naive_merge({}): {}".format(filename, timer() - st))
        res.extend(embed_res)
        res.extend(url_res)
        return res

    elif re.search(r"\.pdf$", filename, re.IGNORECASE):
        layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
        if parser_config.get("analyze_hyperlink", False) and is_root:
            urls = extract_links_from_pdf(binary)

        if isinstance(layout_recognizer, bool):
            layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"

        name = layout_recognizer.strip().lower()
        parser = PARSERS.get(name, by_plaintext)
        callback(0.1, "Start to parse.")

        sections, tables, pdf_parser = parser(
            filename = filename,
            binary = binary,
            from_page = from_page,
            to_page = to_page,
            lang = lang,
            callback = callback,
            layout_recognizer = layout_recognizer,
            **kwargs
        )

        if not sections and not tables:
            return []

        if name in ["tcadp", "docling", "mineru"]:
            parser_config["chunk_token_num"] = 0
        
        res = tokenize_table(tables, doc, is_english)
        callback(0.8, "Finish parsing.")

    elif re.search(r"\.(csv|xlsx?)$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")
        excel_parser = ExcelParser()
        if parser_config.get("html4excel"):
            sections = [(_, "") for _ in excel_parser.html(binary, 12) if _]
        else:
            sections = [(_, "") for _ in excel_parser(binary) if _]
        parser_config["chunk_token_num"] = 12800

    elif re.search(r"\.(txt|py|js|java|c|cpp|h|php|go|ts|sh|cs|kt|sql)$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")
        sections = TxtParser()(filename, binary,
                               parser_config.get("chunk_token_num", 128),
                               parser_config.get("delimiter", "\n!?;。；！？"))
        callback(0.8, "Finish parsing.")

    elif re.search(r"\.(md|markdown)$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")
        markdown_parser = Markdown(int(parser_config.get("chunk_token_num", 128)))
        sections, tables = markdown_parser(filename, binary, separate_tables=False,delimiter=parser_config.get("delimiter", "\n!?;。；！？"))

        try:
            vision_model = LLMBundle(kwargs["tenant_id"], LLMType.IMAGE2TEXT)
            callback(0.2, "Visual model detected. Attempting to enhance figure extraction...")
        except Exception:
            vision_model = None

        if vision_model:
            # Process images for each section
            section_images = []
            for idx, (section_text, _) in enumerate(sections):
                images = markdown_parser.get_pictures(section_text) if section_text else None

                if images:
                    # If multiple images found, combine them using concat_img
                    combined_image = reduce(concat_img, images) if len(images) > 1 else images[0]
                    section_images.append(combined_image)
                    markdown_vision_parser = VisionFigureParser(vision_model=vision_model, figures_data= [((combined_image, ["markdown image"]), [(0, 0, 0, 0, 0)])], **kwargs)
                    boosted_figures = markdown_vision_parser(callback=callback)
                    sections[idx] = (section_text + "\n\n" + "\n\n".join([fig[0][1] for fig in boosted_figures]), sections[idx][1])
                else:
                    section_images.append(None)

        else:
            logging.warning("No visual model detected. Skipping figure parsing enhancement.")

        if parser_config.get("hyperlink_urls", False) and is_root:
            for idx, (section_text, _) in enumerate(sections):
                soup = markdown_parser.md_to_html(section_text)
                hyperlink_urls = markdown_parser.get_hyperlink_urls(soup)
                urls.update(hyperlink_urls)
        res = tokenize_table(tables, doc, is_english)
        callback(0.8, "Finish parsing.")

    elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")
        chunk_token_num = int(parser_config.get("chunk_token_num", 128))
        sections = HtmlParser()(filename, binary, chunk_token_num)
        sections = [(_, "") for _ in sections if _]
        callback(0.8, "Finish parsing.")

    elif re.search(r"\.(json|jsonl|ldjson)$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")
        chunk_token_num = int(parser_config.get("chunk_token_num", 128))
        sections = JsonParser(chunk_token_num)(binary)
        sections = [(_, "") for _ in sections if _]
        callback(0.8, "Finish parsing.")

    elif re.search(r"\.doc$", filename, re.IGNORECASE):
        callback(0.1, "Start to parse.")

        try:
            from tika import parser as tika_parser
        except Exception as e:
            callback(0.8, f"tika not available: {e}. Unsupported .doc parsing.")
            logging.warning(f"tika not available: {e}. Unsupported .doc parsing for {filename}.")
            return []

        binary = BytesIO(binary)
        doc_parsed = tika_parser.from_buffer(binary)
        if doc_parsed.get('content', None) is not None:
            sections = doc_parsed['content'].split('\n')
            sections = [(_, "") for _ in sections if _]
            callback(0.8, "Finish parsing.")
        else:
            callback(0.8, f"tika.parser got empty content from {filename}.")
            logging.warning(f"tika.parser got empty content from {filename}.")
            return []
    else:
        raise NotImplementedError(
            "file type not supported yet(pdf, xlsx, doc, docx, txt supported)")

    st = timer()
    if section_images:
        # if all images are None, set section_images to None
        if all(image is None for image in section_images):
            section_images = None

    if section_images:
        chunks, images = naive_merge_with_images(sections, section_images,
                                        int(parser_config.get(
                                            "chunk_token_num", 128)), parser_config.get(
                                            "delimiter", "\n!?。；！？"))
        if kwargs.get("section_only", False):
            chunks.extend(embed_res)
            return chunks

        res.extend(tokenize_chunks_with_images(chunks, doc, is_english, images))
    else:
        chunks = naive_merge(
            sections, int(parser_config.get(
                "chunk_token_num", 128)), parser_config.get(
                "delimiter", "\n!?。；！？"))
        if kwargs.get("section_only", False):
            chunks.extend(embed_res)
            return chunks

        res.extend(tokenize_chunks(chunks, doc, is_english, pdf_parser))

    if urls and parser_config.get("analyze_hyperlink", False) and is_root:
        for index, url in enumerate(urls):
            html_bytes, metadata = extract_html(url)
            if not html_bytes:
                continue
            try:
                sub_url_res = chunk(url, html_bytes, callback=callback, lang=lang, is_root=False, **kwargs)
            except Exception as e:
                logging.info(f"Failed to chunk url in registered file type {url}: {e}")
                sub_url_res = chunk(f"{index}.html", html_bytes, callback=callback, lang=lang, is_root=False, **kwargs)
            url_res.extend(sub_url_res)
        
    logging.info("naive_merge({}): {}".format(filename, timer() - st))
    
    if embed_res:
        res.extend(embed_res)
    if url_res:
        res.extend(url_res)
    return res


if __name__ == "__main__":
    import sys

    def dummy(prog=None, msg=""):
        pass

    chunk(sys.argv[1], from_page=0, to_page=10, callback=dummy)
